scReadSim.DoubletDetection.detectDoublet

scReadSim.DoubletDetection.detectDoublet(count_mat_filename, directory, outdirectory, omic_choice)[source]

Detect doublets from real count matrix.

Parameters:

  • count_mat_filename (str) – Base name of the count matrix output by function Utility.scATAC_bam2countmat_paral or Utility.scRNA_bam2countmat_paral.

  • directory (str) – Path to the count matrix.

  • outdirectory (str) – Output directory of coordinate files.

  • omic_choice (str) – Specify the omic choice for doublet detection procedure: “ATAC” or “RNA”.