scReadSim.Utility.CallPeak

scReadSim.Utility.CallPeak(macs3_directory, INPUT_bamfile, outdirectory, MACS3_peakname_pre, qval=0.05)[source]

Perform peak calling using MACS3

Parameters:

  • macs3_directory (str) – Path to software MACS3.

  • INPUT_bamfile (str) – Input BAM file for anlaysis.

  • outdirectory (str) – Output directory of peak calling.

  • MACS3_peakname_pre (str) – Base name of peak calling results for MACS3.