scReadSim.scRNA_GenerateBAM.scRNA_CombineBED

scReadSim.scRNA_GenerateBAM.scRNA_CombineBED(outdirectory, gene_read_bedfile_prename, intergene_read_bedfile_prename, BED_filename_combined_pre)

Combine the bed files of foreground and background feature sets into one bed file.

Parameters:

• outdirectory (str) – Directory of gene_read_bedfile_prename.txt and intergene_read_bedfile_prename.txt.

• gene_read_bedfile_prename ('str') – File prename of foreground synthetic reads bed file.

• intergene_read_bedfile_prename ('str') – File prename of background synthetic reads bed file.

• BED_filename_combined_pre ('str') – Specify the combined syntehtic reads bed file prename. The combined bed file will be output to outdirectory.